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EBI 2Can Tutorials Nucleotide Analysis

2Can Support Portal - Nucleotide Analysis

FASTA similarity search <<< 2/8 >>>

Results of FASTA search


These are the results, received via email of the FASTA search described on the previous page, have you decided what sequence 4 is? If you look at the score list, the entry in the database with the best score (In EMBL, not PATENTS) is Human beta2-syntrophin (SNT B2) mRNA. You can see from the alignment of sequence 4 with Human beta2-syntrophin (SNT B2) mRNA that these sequences are identical, so this is the same sequence. 

FASTA searches a protein or DNA sequence data bank
 version 3.4t25 Sept 2, 2005
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query library @ vs +embl library
searching /ebi/services/idata/v1753/fastadb/em_fun library

  1>>>_Sequence - 1700 nt
 vs  EMBL Nucleotide Sequence Database library

19345946543 residues in 7547515 sequences
 statistics sampled from 60000 to 7670844 sequences
  Expectation_n fit: rho(ln(x))= 6.8436+/-9.28e-05; mu= 16.5669+/- 0.005
 mean_var=160.6123+/-27.342, 0's: 210 Z-trim: 277  B-trim: 0 in 0/91
 Lambda= 0.101201

FASTA (3.47 Mar 2004) function [optimized, +5/-4 matrix (5:-4)] ktup: 6
 join: 66, opt: 51, open/ext: -14/-4, width:  16
 Scan time: 2880.180
The best scores are:                                      opt bits E(7547515)
Pairwise Alignment 1 EM_PAT:AX770538; AX770538 Sequence 44 from Pat (1700) [f] 8491 1252.1       0
Pairwise Alignment 2 EM_HUM:U40572; U40572 Human beta2-syntrophin ( (1700) [f] 8491 1252.1       0
Pairwise Alignment 3 EM_PAT:AR559251; AR559251 Sequence 18 from pat (1700) [f] 8491 1252.1       0
Pairwise Alignment 4 EM_PAT:CS428026; CS428026 Sequence 933 from Pa (1712) [f] 8470 1249.1       0
Pairwise Alignment 5 EM_HUM:BC048215; BC048215 Homo sapiens syntrop (1699) [f] 8425 1242.5       0
Pairwise Alignment 6 EM_PAT:CQ723588; CQ723588 Sequence 9522 from P (1701) [f] 8423 1242.2       0
Pairwise Alignment 7 EM_MUS:U00678; U00678 Mus musculus beta-2-synt (3211) [f] 6174 914.1       0
Pairwise Alignment 8 EM_PAT:CS427156; CS427156 Sequence 61 from Pat (4423) [f] 6174 914.3       0
Pairwise Alignment 9 EM_SY:EF043690; EF043690 Synthetic construct c (1563) [f] 5984 886.1       0
Pairwise Alignment 10 EM_MUS:BC030352; BC030352 Mus musculus syntrop (1340) [r] 5377 797.4       0

>>EM_PAT:AX770538; AX770538 Sequence 44 from Patent WO03  (1700 nt)
 initn: 8480 init1: 8480 opt: 8491  Z-score: 6696.7  bits: 1252.1 E():    0
banded Smith-Waterman score: 8491;  99.941% identity (99.941% similar) in 1700 nt overlap (1-1700:1-1700)

               10        20        30        40        50        60
_Seque GCCGAGGCTGCCTGACTGGAATGAGGGTAGCTGCGGCGACTGCGGCGGCTGGAGCGGGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCCGAGGCTGCCTGACTGGAATGAGGGTAGCTGCGGCGACTGCGGCGGCTGGAGCGGGGC
               10        20        30        40        50        60

               70        80        90       100       110       120
_Seque CGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGGTGGAGCTGCTCCTGAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGGTGGAGCTGCTCCTGAGGG
               70        80        90       100       110       120

              130       140       150       160       170       180
_Seque AGCGCTGGGTCCGAGTGGTGGCCGAGCTGAGCGGGGAGAGCCTGAGCCTGACGGGCGACG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT AGCGCTGGGTCCGAGTGGTGGCCGAGCTGAGCGGGGAGAGCCTGAGCCTGACGGGCGACG
              130       140       150       160       170       180

              190       200       210       220       230       240
_Seque CCGCCGCGGCCGAGCTGGAGCCCGCTCTGGGACCCGCGGCCGCCGCCTTCAACGGCCTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CCGCCGCGGCCGAGCTGGAGCCCGCTCTGGGACCCGCGGCCGCCGCCTTCAACGGCCTCC
              190       200       210       220       230       240

              250       260       270       280       290       300
_Seque CAAACGGCGGCGGCGCGGGCGACTCGCTGCCCGGGAGCCCAAGCCGCGGCCTGGGGCCCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CAAACGGCGGCGGCGCGGGCGACTCGCTGCCCGGGAGCCCAAGCCGCGGCCTGGGGCCCC
              250       260       270       280       290       300

              310       320       330       340       350       360
_Seque CGAGCCCGCCGGCGCCGCCTCGGGGCCCCGCGGGTGAGGCGGGCGCGTCGCCGCCCGTGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CGAGCCCGCCGGCGCCGCCTCGGGGCCCCGCGGGTGAGGCGGGCGCGTCGCCGCCCGTGC
              310       320       330       340       350       360

              370       380       390       400       410       420
_Seque GCCGGGTGCGGGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCATCAGCATCAAGGGCGGCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCCGGGTGCGGGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCATCAGCATCAAGGGCGGCC
              370       380       390       400       410       420

              430       440       450       460       470       480
_Seque GCGAGAACCGGATGCCGATCCTCATCTCCAAGATCTTCCCCGGGCTGGCTGCCGACCAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCGAGAACCGGATGCCGATCCTCATCTCCAAGATCTTCCCCGGGCTGGCTGCCGACCAGA
              430       440       450       460       470       480

              490       500       510       520       530       540
_Seque GCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACGGCACCGACCTGCGCCAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACGGCACCGACCTGCGCCAGG
              490       500       510       520       530       540

              550       560       570       580       590       600
_Seque CCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGCGCGGGCAAGGAGGTGCTGCTGGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGCGCGGGCAAGGAGGTGCTGCTGGAGG
              550       560       570       580       590       600

              610       620       630       640       650       660
_Seque TCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGC
              610       620       630       640       650       660

              670       680       690       700       710       720
_Seque CGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGC
              670       680       690       700       710       720

              730       740       750       760       770       780
_Seque CAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCTG
              730       740       750       760       770       780

              790       800       810       820       830       840
_Seque CTAGAAACCTAAGCATGCCGGATCTGGAAAACAGATTGATAGAGCTACATTCTCCTGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CTAGAAACCTAAGCATGCCGGATCTGGAAAACAGATTGATAGAGCTACATTCTCCTGATA
              790       800       810       820       830       840

              850       860       870       880       890       900
_Seque GCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTAG
              850       860       870       880       890       900

              910       920       930       940       950       960
_Seque CTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATGC
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
_Seque TTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAG
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
_Seque AACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT AACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACTG
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
_Seque AGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAGATGCCTGGGCGTCACCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT AGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAGATGCCTGGGCGTCACCAT
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
_Seque GCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTGGCTCCGGATGTCGATCCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTGGCTCCGGATGTCGATCCC
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
_Seque CCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCTCTCGACAGGGCATTGAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCTCTCGACAGGGCATTGAGA
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
_Seque TGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCTGGACCAGGATACTTGTTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCTGGACCAGGATACTTGTTC
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
_Seque AGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTCTAGGCTGCATGTTAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT AGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTCTAGGCTGCATGTTAAATG
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
_Seque GCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCACCATCTCAAGGGAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCACCATCTCAAGGGAAAATG
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
_Seque GAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGCTGAAGATGTCTGCTGATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGCTGAAGATGTCTGCTGATG
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
_Seque ATGGCATCCGAAATCTATACTTGGATTTTGGTGGTCCCGAGGGAGAACTGACCATGGACC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT ATGGCATCCGAAATCTATACTTGGATTTTGGTGGTCCCGAGGGAGAACTGACCATGGACC
             1510      1520      1530      1540      1550      1560

             1570      1580      1590      1600      1610      1620
_Seque TGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGTTTTTATCGGCCAAAGTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGTTTTTATCGGCCAAAGTCA
             1570      1580      1590      1600      1610      1620

             1630      1640      1650      1660      1670      1680
_Seque CTCGTATGGGACTGCTTGTATGAGCAACAAAAAATCAGAAAAGAGCCTTGACTGTCACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CTCGTATGGGACTGCTTGTATGAGCAACAAAAAATCAGAAAAGAGCCTTGACTGTCACAA
             1630      1640      1650      1660      1670      1680

             1690      1700
_Seque GAAATATTTCCACCTCAAAA
       :::::::::::::::: :::
EM_PAT GAAATATTTCCACCTCCAAA
             1690      1700

>>EM_HUM:U40572; U40572 Human beta2-syntrophin (SNT B2)   (1700 nt)
 initn: 8480 init1: 8480 opt: 8491  Z-score: 6696.7  bits: 1252.1 E():    0
banded Smith-Waterman score: 8491;  99.941% identity (99.941% similar) in 1700 nt overlap (1-1700:1-1700)

               10        20        30        40        50        60
_Seque GCCGAGGCTGCCTGACTGGAATGAGGGTAGCTGCGGCGACTGCGGCGGCTGGAGCGGGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM GCCGAGGCTGCCTGACTGGAATGAGGGTAGCTGCGGCGACTGCGGCGGCTGGAGCGGGGC
               10        20        30        40        50        60

               70        80        90       100       110       120
_Seque CGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGGTGGAGCTGCTCCTGAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGGTGGAGCTGCTCCTGAGGG
               70        80        90       100       110       120

              130       140       150       160       170       180
_Seque AGCGCTGGGTCCGAGTGGTGGCCGAGCTGAGCGGGGAGAGCCTGAGCCTGACGGGCGACG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM AGCGCTGGGTCCGAGTGGTGGCCGAGCTGAGCGGGGAGAGCCTGAGCCTGACGGGCGACG
              130       140       150       160       170       180

              190       200       210       220       230       240
_Seque CCGCCGCGGCCGAGCTGGAGCCCGCTCTGGGACCCGCGGCCGCCGCCTTCAACGGCCTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CCGCCGCGGCCGAGCTGGAGCCCGCTCTGGGACCCGCGGCCGCCGCCTTCAACGGCCTCC
              190       200       210       220       230       240

              250       260       270       280       290       300
_Seque CAAACGGCGGCGGCGCGGGCGACTCGCTGCCCGGGAGCCCAAGCCGCGGCCTGGGGCCCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CAAACGGCGGCGGCGCGGGCGACTCGCTGCCCGGGAGCCCAAGCCGCGGCCTGGGGCCCC
              250       260       270       280       290       300

              310       320       330       340       350       360
_Seque CGAGCCCGCCGGCGCCGCCTCGGGGCCCCGCGGGTGAGGCGGGCGCGTCGCCGCCCGTGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CGAGCCCGCCGGCGCCGCCTCGGGGCCCCGCGGGTGAGGCGGGCGCGTCGCCGCCCGTGC
              310       320       330       340       350       360

              370       380       390       400       410       420
_Seque GCCGGGTGCGGGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCATCAGCATCAAGGGCGGCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM GCCGGGTGCGGGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCATCAGCATCAAGGGCGGCC
              370       380       390       400       410       420

              430       440       450       460       470       480
_Seque GCGAGAACCGGATGCCGATCCTCATCTCCAAGATCTTCCCCGGGCTGGCTGCCGACCAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM GCGAGAACCGGATGCCGATCCTCATCTCCAAGATCTTCCCCGGGCTGGCTGCCGACCAGA
              430       440       450       460       470       480

              490       500       510       520       530       540
_Seque GCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACGGCACCGACCTGCGCCAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM GCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACGGCACCGACCTGCGCCAGG
              490       500       510       520       530       540

              550       560       570       580       590       600
_Seque CCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGCGCGGGCAAGGAGGTGCTGCTGGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGCGCGGGCAAGGAGGTGCTGCTGGAGG
              550       560       570       580       590       600

              610       620       630       640       650       660
_Seque TCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM TCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGC
              610       620       630       640       650       660

              670       680       690       700       710       720
_Seque CGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGC
              670       680       690       700       710       720

              730       740       750       760       770       780
_Seque CAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCTG
              730       740       750       760       770       780

              790       800       810       820       830       840
_Seque CTAGAAACCTAAGCATGCCGGATCTGGAAAACAGATTGATAGAGCTACATTCTCCTGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CTAGAAACCTAAGCATGCCGGATCTGGAAAACAGATTGATAGAGCTACATTCTCCTGATA
              790       800       810       820       830       840

              850       860       870       880       890       900
_Seque GCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM GCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTAG
              850       860       870       880       890       900

              910       920       930       940       950       960
_Seque CTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATGC
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
_Seque TTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM TTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAG
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
_Seque AACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM AACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACTG
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
_Seque AGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAGATGCCTGGGCGTCACCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM AGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAGATGCCTGGGCGTCACCAT
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
_Seque GCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTGGCTCCGGATGTCGATCCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM GCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTGGCTCCGGATGTCGATCCC
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
_Seque CCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCTCTCGACAGGGCATTGAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCTCTCGACAGGGCATTGAGA
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
_Seque TGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCTGGACCAGGATACTTGTTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM TGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCTGGACCAGGATACTTGTTC
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
_Seque AGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTCTAGGCTGCATGTTAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM AGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTCTAGGCTGCATGTTAAATG
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
_Seque GCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCACCATCTCAAGGGAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM GCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCACCATCTCAAGGGAAAATG
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
_Seque GAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGCTGAAGATGTCTGCTGATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM GAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGCTGAAGATGTCTGCTGATG
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
_Seque ATGGCATCCGAAATCTATACTTGGATTTTGGTGGTCCCGAGGGAGAACTGACCATGGACC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM ATGGCATCCGAAATCTATACTTGGATTTTGGTGGTCCCGAGGGAGAACTGACCATGGACC
             1510      1520      1530      1540      1550      1560

             1570      1580      1590      1600      1610      1620
_Seque TGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGTTTTTATCGGCCAAAGTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM TGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGTTTTTATCGGCCAAAGTCA
             1570      1580      1590      1600      1610      1620

             1630      1640      1650      1660      1670      1680
_Seque CTCGTATGGGACTGCTTGTATGAGCAACAAAAAATCAGAAAAGAGCCTTGACTGTCACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CTCGTATGGGACTGCTTGTATGAGCAACAAAAAATCAGAAAAGAGCCTTGACTGTCACAA
             1630      1640      1650      1660      1670      1680

             1690      1700
_Seque GAAATATTTCCACCTCAAAA
       :::::::::::::::: :::
EM_HUM GAAATATTTCCACCTCCAAA
             1690      1700

>>EM_PAT:AR559251; AR559251 Sequence 18 from patent US 6  (1700 nt)
 initn: 8480 init1: 8480 opt: 8491  Z-score: 6696.7  bits: 1252.1 E():    0
banded Smith-Waterman score: 8491;  99.941% identity (99.941% similar) in 1700 nt overlap (1-1700:1-1700)

               10        20        30        40        50        60
_Seque GCCGAGGCTGCCTGACTGGAATGAGGGTAGCTGCGGCGACTGCGGCGGCTGGAGCGGGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCCGAGGCTGCCTGACTGGAATGAGGGTAGCTGCGGCGACTGCGGCGGCTGGAGCGGGGC
               10        20        30        40        50        60

               70        80        90       100       110       120
_Seque CGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGGTGGAGCTGCTCCTGAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGGTGGAGCTGCTCCTGAGGG
               70        80        90       100       110       120

              130       140       150       160       170       180
_Seque AGCGCTGGGTCCGAGTGGTGGCCGAGCTGAGCGGGGAGAGCCTGAGCCTGACGGGCGACG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT AGCGCTGGGTCCGAGTGGTGGCCGAGCTGAGCGGGGAGAGCCTGAGCCTGACGGGCGACG
              130       140       150       160       170       180

              190       200       210       220       230       240
_Seque CCGCCGCGGCCGAGCTGGAGCCCGCTCTGGGACCCGCGGCCGCCGCCTTCAACGGCCTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CCGCCGCGGCCGAGCTGGAGCCCGCTCTGGGACCCGCGGCCGCCGCCTTCAACGGCCTCC
              190       200       210       220       230       240

              250       260       270       280       290       300
_Seque CAAACGGCGGCGGCGCGGGCGACTCGCTGCCCGGGAGCCCAAGCCGCGGCCTGGGGCCCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CAAACGGCGGCGGCGCGGGCGACTCGCTGCCCGGGAGCCCAAGCCGCGGCCTGGGGCCCC
              250       260       270       280       290       300

              310       320       330       340       350       360
_Seque CGAGCCCGCCGGCGCCGCCTCGGGGCCCCGCGGGTGAGGCGGGCGCGTCGCCGCCCGTGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CGAGCCCGCCGGCGCCGCCTCGGGGCCCCGCGGGTGAGGCGGGCGCGTCGCCGCCCGTGC
              310       320       330       340       350       360

              370       380       390       400       410       420
_Seque GCCGGGTGCGGGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCATCAGCATCAAGGGCGGCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCCGGGTGCGGGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCATCAGCATCAAGGGCGGCC
              370       380       390       400       410       420

              430       440       450       460       470       480
_Seque GCGAGAACCGGATGCCGATCCTCATCTCCAAGATCTTCCCCGGGCTGGCTGCCGACCAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCGAGAACCGGATGCCGATCCTCATCTCCAAGATCTTCCCCGGGCTGGCTGCCGACCAGA
              430       440       450       460       470       480

              490       500       510       520       530       540
_Seque GCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACGGCACCGACCTGCGCCAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACGGCACCGACCTGCGCCAGG
              490       500       510       520       530       540

              550       560       570       580       590       600
_Seque CCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGCGCGGGCAAGGAGGTGCTGCTGGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGCGCGGGCAAGGAGGTGCTGCTGGAGG
              550       560       570       580       590       600

              610       620       630       640       650       660
_Seque TCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGC
              610       620       630       640       650       660

              670       680       690       700       710       720
_Seque CGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGC
              670       680       690       700       710       720

              730       740       750       760       770       780
_Seque CAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCTG
              730       740       750       760       770       780

              790       800       810       820       830       840
_Seque CTAGAAACCTAAGCATGCCGGATCTGGAAAACAGATTGATAGAGCTACATTCTCCTGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CTAGAAACCTAAGCATGCCGGATCTGGAAAACAGATTGATAGAGCTACATTCTCCTGATA
              790       800       810       820       830       840

              850       860       870       880       890       900
_Seque GCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTAG
              850       860       870       880       890       900

              910       920       930       940       950       960
_Seque CTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATGC
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
_Seque TTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAG
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
_Seque AACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT AACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACTG
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
_Seque AGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAGATGCCTGGGCGTCACCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT AGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAGATGCCTGGGCGTCACCAT
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
_Seque GCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTGGCTCCGGATGTCGATCCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTGGCTCCGGATGTCGATCCC
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
_Seque CCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCTCTCGACAGGGCATTGAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCTCTCGACAGGGCATTGAGA
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
_Seque TGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCTGGACCAGGATACTTGTTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCTGGACCAGGATACTTGTTC
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
_Seque AGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTCTAGGCTGCATGTTAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT AGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTCTAGGCTGCATGTTAAATG
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
_Seque GCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCACCATCTCAAGGGAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCACCATCTCAAGGGAAAATG
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
_Seque GAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGCTGAAGATGTCTGCTGATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGCTGAAGATGTCTGCTGATG
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
_Seque ATGGCATCCGAAATCTATACTTGGATTTTGGTGGTCCCGAGGGAGAACTGACCATGGACC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT ATGGCATCCGAAATCTATACTTGGATTTTGGTGGTCCCGAGGGAGAACTGACCATGGACC
             1510      1520      1530      1540      1550      1560

             1570      1580      1590      1600      1610      1620
_Seque TGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGTTTTTATCGGCCAAAGTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGTTTTTATCGGCCAAAGTCA
             1570      1580      1590      1600      1610      1620

             1630      1640      1650      1660      1670      1680
_Seque CTCGTATGGGACTGCTTGTATGAGCAACAAAAAATCAGAAAAGAGCCTTGACTGTCACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CTCGTATGGGACTGCTTGTATGAGCAACAAAAAATCAGAAAAGAGCCTTGACTGTCACAA
             1630      1640      1650      1660      1670      1680

             1690      1700
_Seque GAAATATTTCCACCTCAAAA
       :::::::::::::::: :::
EM_PAT GAAATATTTCCACCTCCAAA
             1690      1700

>>EM_PAT:CS428026; CS428026 Sequence 933 from Patent WO2  (1712 nt)
 initn: 8470 init1: 8470 opt: 8470  Z-score: 6680.1  bits: 1249.1 E():    0
banded Smith-Waterman score: 8470;  100.000% identity (100.000% similar) in 1694 nt overlap (1-1694:19-1712)

                                 10        20        30        40  
_Seque                   GCCGAGGCTGCCTGACTGGAATGAGGGTAGCTGCGGCGACTG
                         ::::::::::::::::::::::::::::::::::::::::::
EM_PAT GGGCGGGAAGAGGGAAGCGCCGAGGCTGCCTGACTGGAATGAGGGTAGCTGCGGCGACTG
               10        20        30        40        50        60

             50        60        70        80        90       100  
_Seque CGGCGGCTGGAGCGGGGCCGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CGGCGGCTGGAGCGGGGCCGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGG
               70        80        90       100       110       120

            110       120       130       140       150       160  
_Seque TGGAGCTGCTCCTGAGGGAGCGCTGGGTCCGAGTGGTGGCCGAGCTGAGCGGGGAGAGCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TGGAGCTGCTCCTGAGGGAGCGCTGGGTCCGAGTGGTGGCCGAGCTGAGCGGGGAGAGCC
              130       140       150       160       170       180

            170       180       190       200       210       220  
_Seque TGAGCCTGACGGGCGACGCCGCCGCGGCCGAGCTGGAGCCCGCTCTGGGACCCGCGGCCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TGAGCCTGACGGGCGACGCCGCCGCGGCCGAGCTGGAGCCCGCTCTGGGACCCGCGGCCG
              190       200       210       220       230       240

            230       240       250       260       270       280  
_Seque CCGCCTTCAACGGCCTCCCAAACGGCGGCGGCGCGGGCGACTCGCTGCCCGGGAGCCCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CCGCCTTCAACGGCCTCCCAAACGGCGGCGGCGCGGGCGACTCGCTGCCCGGGAGCCCAA
              250       260       270       280       290       300

            290       300       310       320       330       340  
_Seque GCCGCGGCCTGGGGCCCCCGAGCCCGCCGGCGCCGCCTCGGGGCCCCGCGGGTGAGGCGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCCGCGGCCTGGGGCCCCCGAGCCCGCCGGCGCCGCCTCGGGGCCCCGCGGGTGAGGCGG
              310       320       330       340       350       360

            350       360       370       380       390       400  
_Seque GCGCGTCGCCGCCCGTGCGCCGGGTGCGGGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCGCGTCGCCGCCCGTGCGCCGGGTGCGGGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCA
              370       380       390       400       410       420

            410       420       430       440       450       460  
_Seque TCAGCATCAAGGGCGGCCGCGAGAACCGGATGCCGATCCTCATCTCCAAGATCTTCCCCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TCAGCATCAAGGGCGGCCGCGAGAACCGGATGCCGATCCTCATCTCCAAGATCTTCCCCG
              430       440       450       460       470       480

            470       480       490       500       510       520  
_Seque GGCTGGCTGCCGACCAGAGCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GGCTGGCTGCCGACCAGAGCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACG
              490       500       510       520       530       540

            530       540       550       560       570       580  
_Seque GCACCGACCTGCGCCAGGCCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGCGCGGGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCACCGACCTGCGCCAGGCCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGCGCGGGCA
              550       560       570       580       590       600

            590       600       610       620       630       640  
_Seque AGGAGGTGCTGCTGGAGGTCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT AGGAGGTGCTGCTGGAGGTCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCAT
              610       620       630       640       650       660

            650       660       670       680       690       700  
_Seque CATTAGTATCAGATCTGCCGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CATTAGTATCAGATCTGCCGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCA
              670       680       690       700       710       720

            710       720       730       740       750       760  
_Seque GTGAGGACTCTGGTTCGCCAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GTGAGGACTCTGGTTCGCCAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTC
              730       740       750       760       770       780

            770       780       790       800       810       820  
_Seque TCAAAATGTGCTTTGCTGCTAGAAACCTAAGCATGCCGGATCTGGAAAACAGATTGATAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TCAAAATGTGCTTTGCTGCTAGAAACCTAAGCATGCCGGATCTGGAAAACAGATTGATAG
              790       800       810       820       830       840

            830       840       850       860       870       880  
_Seque AGCTACATTCTCCTGATAGCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT AGCTACATTCTCCTGATAGCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAG
              850       860       870       880       890       900

            890       900       910       920       930       940  
_Seque CACACTCCTGGTTCGTAGCTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CACACTCCTGGTTCGTAGCTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGG
              910       920       930       940       950       960

            950       960       970       980       990      1000  
_Seque CTGAACTCAACGCCATGCTTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CTGAACTCAACGCCATGCTTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGC
              970       980       990      1000      1010      1020

           1010      1020      1030      1040      1050      1060  
_Seque ATATTGCCTGGCTGGCAGAACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT ATATTGCCTGGCTGGCAGAACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTG
             1030      1040      1050      1060      1070      1080

           1070      1080      1090      1100      1110      1120  
_Seque TCCTCATGGCTGTGACTGAGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TCCTCATGGCTGTGACTGAGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAG
             1090      1100      1110      1120      1130      1140

           1130      1140      1150      1160      1170      1180  
_Seque ATGCCTGGGCGTCACCATGCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT ATGCCTGGGCGTCACCATGCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTG
             1150      1160      1170      1180      1190      1200

           1190      1200      1210      1220      1230      1240  
_Seque GCTCCGGATGTCGATCCCCCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCTCCGGATGTCGATCCCCCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCT
             1210      1220      1230      1240      1250      1260

           1250      1260      1270      1280      1290      1300  
_Seque CTCGACAGGGCATTGAGATGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CTCGACAGGGCATTGAGATGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCT
             1270      1280      1290      1300      1310      1320

           1310      1320      1330      1340      1350      1360  
_Seque GGACCAGGATACTTGTTCAGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GGACCAGGATACTTGTTCAGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTC
             1330      1340      1350      1360      1370      1380

           1370      1380      1390      1400      1410      1420  
_Seque TAGGCTGCATGTTAAATGGCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TAGGCTGCATGTTAAATGGCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCA
             1390      1400      1410      1420      1430      1440

           1430      1440      1450      1460      1470      1480  
_Seque CCATCTCAAGGGAAAATGGAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CCATCTCAAGGGAAAATGGAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGC
             1450      1460      1470      1480      1490      1500

           1490      1500      1510      1520      1530      1540  
_Seque TGAAGATGTCTGCTGATGATGGCATCCGAAATCTATACTTGGATTTTGGTGGTCCCGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TGAAGATGTCTGCTGATGATGGCATCCGAAATCTATACTTGGATTTTGGTGGTCCCGAGG
             1510      1520      1530      1540      1550      1560

           1550      1560      1570      1580      1590      1600  
_Seque GAGAACTGACCATGGACCTGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GAGAACTGACCATGGACCTGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGT
             1570      1580      1590      1600      1610      1620

           1610      1620      1630      1640      1650      1660  
_Seque TTTTATCGGCCAAAGTCACTCGTATGGGACTGCTTGTATGAGCAACAAAAAATCAGAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TTTTATCGGCCAAAGTCACTCGTATGGGACTGCTTGTATGAGCAACAAAAAATCAGAAAA
             1630      1640      1650      1660      1670      1680

           1670      1680      1690      1700
_Seque GAGCCTTGACTGTCACAAGAAATATTTCCACCTCAAAA
       ::::::::::::::::::::::::::::::::      
EM_PAT GAGCCTTGACTGTCACAAGAAATATTTCCACC      
             1690      1700      1710        


>>EM_HUM:BC048215; BC048215 Homo sapiens syntrophin, bet  (1699 nt)
 initn: 8425 init1: 8425 opt: 8425  Z-score: 6644.6  bits: 1242.5 E():    0
banded Smith-Waterman score: 8425;  100.000% identity (100.000% similar) in 1685 nt overlap (16-1700:1-1685)

               10        20        30        40        50        60
_Seque GCCGAGGCTGCCTGACTGGAATGAGGGTAGCTGCGGCGACTGCGGCGGCTGGAGCGGGGC
                      :::::::::::::::::::::::::::::::::::::::::::::
EM_HUM                CTGGAATGAGGGTAGCTGCGGCGACTGCGGCGGCTGGAGCGGGGC
                              10        20        30        40     

               70        80        90       100       110       120
_Seque CGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGGTGGAGCTGCTCCTGAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGGTGGAGCTGCTCCTGAGGG
          50        60        70        80        90       100     

              130       140       150       160       170       180
_Seque AGCGCTGGGTCCGAGTGGTGGCCGAGCTGAGCGGGGAGAGCCTGAGCCTGACGGGCGACG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM AGCGCTGGGTCCGAGTGGTGGCCGAGCTGAGCGGGGAGAGCCTGAGCCTGACGGGCGACG
         110       120       130       140       150       160     

              190       200       210       220       230       240
_Seque CCGCCGCGGCCGAGCTGGAGCCCGCTCTGGGACCCGCGGCCGCCGCCTTCAACGGCCTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CCGCCGCGGCCGAGCTGGAGCCCGCTCTGGGACCCGCGGCCGCCGCCTTCAACGGCCTCC
         170       180       190       200       210       220     

              250       260       270       280       290       300
_Seque CAAACGGCGGCGGCGCGGGCGACTCGCTGCCCGGGAGCCCAAGCCGCGGCCTGGGGCCCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CAAACGGCGGCGGCGCGGGCGACTCGCTGCCCGGGAGCCCAAGCCGCGGCCTGGGGCCCC
         230       240       250       260       270       280     

              310       320       330       340       350       360
_Seque CGAGCCCGCCGGCGCCGCCTCGGGGCCCCGCGGGTGAGGCGGGCGCGTCGCCGCCCGTGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CGAGCCCGCCGGCGCCGCCTCGGGGCCCCGCGGGTGAGGCGGGCGCGTCGCCGCCCGTGC
         290       300       310       320       330       340     

              370       380       390       400       410       420
_Seque GCCGGGTGCGGGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCATCAGCATCAAGGGCGGCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM GCCGGGTGCGGGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCATCAGCATCAAGGGCGGCC
         350       360       370       380       390       400     

              430       440       450       460       470       480
_Seque GCGAGAACCGGATGCCGATCCTCATCTCCAAGATCTTCCCCGGGCTGGCTGCCGACCAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM GCGAGAACCGGATGCCGATCCTCATCTCCAAGATCTTCCCCGGGCTGGCTGCCGACCAGA
         410       420       430       440       450       460     

              490       500       510       520       530       540
_Seque GCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACGGCACCGACCTGCGCCAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM GCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACGGCACCGACCTGCGCCAGG
         470       480       490       500       510       520     

              550       560       570       580       590       600
_Seque CCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGCGCGGGCAAGGAGGTGCTGCTGGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGCGCGGGCAAGGAGGTGCTGCTGGAGG
         530       540       550       560       570       580     

              610       620       630       640       650       660
_Seque TCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM TCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGC
         590       600       610       620       630       640     

              670       680       690       700       710       720
_Seque CGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGC
         650       660       670       680       690       700     

              730       740       750       760       770       780
_Seque CAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCTG
         710       720       730       740       750       760     

              790       800       810       820       830       840
_Seque CTAGAAACCTAAGCATGCCGGATCTGGAAAACAGATTGATAGAGCTACATTCTCCTGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CTAGAAACCTAAGCATGCCGGATCTGGAAAACAGATTGATAGAGCTACATTCTCCTGATA
         770       780       790       800       810       820     

              850       860       870       880       890       900
_Seque GCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM GCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTAG
         830       840       850       860       870       880     

              910       920       930       940       950       960
_Seque CTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATGC
         890       900       910       920       930       940     

              970       980       990      1000      1010      1020
_Seque TTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM TTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAG
         950       960       970       980       990      1000     

             1030      1040      1050      1060      1070      1080
_Seque AACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM AACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACTG
        1010      1020      1030      1040      1050      1060     

             1090      1100      1110      1120      1130      1140
_Seque AGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAGATGCCTGGGCGTCACCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM AGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAGATGCCTGGGCGTCACCAT
        1070      1080      1090      1100      1110      1120     

             1150      1160      1170      1180      1190      1200
_Seque GCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTGGCTCCGGATGTCGATCCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM GCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTGGCTCCGGATGTCGATCCC
        1130      1140      1150      1160      1170      1180     

             1210      1220      1230      1240      1250      1260
_Seque CCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCTCTCGACAGGGCATTGAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCTCTCGACAGGGCATTGAGA
        1190      1200      1210      1220      1230      1240     

             1270      1280      1290      1300      1310      1320
_Seque TGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCTGGACCAGGATACTTGTTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM TGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCTGGACCAGGATACTTGTTC
        1250      1260      1270      1280      1290      1300     

             1330      1340      1350      1360      1370      1380
_Seque AGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTCTAGGCTGCATGTTAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM AGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTCTAGGCTGCATGTTAAATG
        1310      1320      1330      1340      1350      1360     

             1390      1400      1410      1420      1430      1440
_Seque GCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCACCATCTCAAGGGAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM GCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCACCATCTCAAGGGAAAATG
        1370      1380      1390      1400      1410      1420     

             1450      1460      1470      1480      1490      1500
_Seque GAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGCTGAAGATGTCTGCTGATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM GAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGCTGAAGATGTCTGCTGATG
        1430      1440      1450      1460      1470      1480     

             1510      1520      1530      1540      1550      1560
_Seque ATGGCATCCGAAATCTATACTTGGATTTTGGTGGTCCCGAGGGAGAACTGACCATGGACC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM ATGGCATCCGAAATCTATACTTGGATTTTGGTGGTCCCGAGGGAGAACTGACCATGGACC
        1490      1500      1510      1520      1530      1540     

             1570      1580      1590      1600      1610      1620
_Seque TGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGTTTTTATCGGCCAAAGTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM TGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGTTTTTATCGGCCAAAGTCA
        1550      1560      1570      1580      1590      1600     

             1630      1640      1650      1660      1670      1680
_Seque CTCGTATGGGACTGCTTGTATGAGCAACAAAAAATCAGAAAAGAGCCTTGACTGTCACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HUM CTCGTATGGGACTGCTTGTATGAGCAACAAAAAATCAGAAAAGAGCCTTGACTGTCACAA
        1610      1620      1630      1640      1650      1660     

             1690      1700              
_Seque GAAATATTTCCACCTCAAAA              
       ::::::::::::::::::::              
EM_HUM GAAATATTTCCACCTCAAAAAAAAAAAAAAAAAA
        1670      1680      1690         

>>EM_PAT:CQ723588; CQ723588 Sequence 9522 from Patent WO  (1701 nt)
 initn: 7632 init1: 4920 opt: 8423  Z-score: 6643.0  bits: 1242.2 E():    0
banded Smith-Waterman score: 8423;  99.647% identity (99.647% similar) in 1701 nt overlap (1-1699:1-1701)

               10        20        30        40        50        60
_Seque GCCGAGGCTGCCTGACTGGAATGAGGGTAGCTGCGGCGACTGCGGCGGCTGGAGCGGGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCCGAGGCTGCCTGACTGGAATGAGGGTAGCTGCGGCGACTGCGGCGGCTGGAGCGGGGC
               10        20        30        40        50        60

               70        80        90       100       110       120
_Seque CGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGGTGGAGCTGCTCCTGAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGGTGGAGCTGCTCCTGAGGG
               70        80        90       100       110       120

              130       140       150       160       170       180
_Seque AGCGCTGGGTCCGAGTGGTGGCCGAGCTGAGCGGGGAGAGCCTGAGCCTGACGGGCGACG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT AGCGCTGGGTCCGAGTGGTGGCCGAGCTGAGCGGGGAGAGCCTGAGCCTGACGGGCGACG
              130       140       150       160       170       180

              190       200       210       220       230       240
_Seque CCGCCGCGGCCGAGCTGGAGCCCGCTCTGGGACCCGCGGCCGCCGCCTTCAACGGCCTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CCGCCGCGGCCGAGCTGGAGCCCGCTCTGGGACCCGCGGCCGCCGCCTTCAACGGCCTCC
              190       200       210       220       230       240

              250       260       270       280       290       300
_Seque CAAACGGCGGCGGCGCGGGCGACTCGCTGCCCGGGAGCCCAAGCCGCGGCCTGGGGCCCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CAAACGGCGGCGGCGCGGGCGACTCGCTGCCCGGGAGCCCAAGCCGCGGCCTGGGGCCCC
              250       260       270       280       290       300

              310       320       330       340       350       360
_Seque CGAGCCCGCCGGCGCCGCCTCGGGGCCCCGCGGGTGAGGCGGGCGCGTCGCCGCCCGTGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CGAGCCCGCCGGCGCCGCCTCGGGGCCCCGCGGGTGAGGCGGGCGCGTCGCCGCCCGTGC
              310       320       330       340       350       360

              370       380       390       400       410       420
_Seque GCCGGGTGCGGGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCATCAGCATCAAGGGCGGCC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :: ::
EM_PAT GCCGGGTGCGGGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCATCAGCATCAAGGACGACC
              370       380       390       400       410       420

              430       440       450       460       470       480
_Seque GCGAGAACCGGATGCCGATCCTCATCTCCAAGATCTTCCCCGGGCTGGCTGCCGACCAGA
       ::::::::::::: :::::::::::::::::::::::::: :::::::::::::::::::
EM_PAT GCGAGAACCGGATACCGATCCTCATCTCCAAGATCTTCCCGGGGCTGGCTGCCGACCAGA
              430       440       450       460       470       480

              490       500       510       520       530       540
_Seque GCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACGGCACCGACCTGCGCCAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACGGCACCGACCTGCGCCAGG
              490       500       510       520       530       540

              550        560       570       580       590         
_Seque CCACCCACGACCAG-GCCGTGCAGGCGCTGAAGCGCGCGGGCAAGGAGGTGCTGCTGGAG
       :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CCACCCACGACCAGTGCCGTGCAGGCGCTGAAGCGCGCGGGCAAGGAGGTGCTGCTGGAG
              550       560       570       580       590       600

     600       610       620       630       640       650         
_Seque GTCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GTCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTG
              610       620       630       640       650       660

     660       670       680       690       700       710         
_Seque CCGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CCGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCG
              670       680       690       700       710       720

     720       730       740       750       760       770         
_Seque CCAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CCAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCT
              730       740       750       760       770       780

     780       790       800       810       820       830         
_Seque GCTAGAAACCTAAGCATGCCGGATCTGGAAAACAGATTGATAGAGCTACATTCTCCTGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCTAGAAACCTAAGCATGCCGGATCTGGAAAACAGATTGATAGAGCTACATTCTCCTGAT
              790       800       810       820       830       840

     840       850       860       870       880       890         
_Seque AGCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT AGCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTA
              850       860       870       880       890       900

     900       910       920       930       940       950         
_Seque GCTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATG
              910       920       930       940       950       960

     960       970       980       990      1000      1010         
_Seque CTTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CTTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCA
              970       980       990      1000      1010      1020

    1020      1030      1040      1050      1060      1070         
_Seque GAACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GAACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACT
             1030      1040      1050      1060      1070      1080

    1080      1090      1100      1110      1120      1130         
_Seque GAGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAGATGCCTGGGCGTCACCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GAGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAGATGCCTGGGCGTCACCA
             1090      1100      1110      1120      1130      1140

    1140      1150      1160      1170      1180      1190         
_Seque TGCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTGGCTCCGGATGTCGATCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT TGCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTGGCTCCGGATGTCGATCC
             1150      1160      1170      1180      1190      1200

    1200      1210      1220      1230      1240      1250         
_Seque CCCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCTCTCGACAGGGCATTGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CCCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCTCTCGACAGGGCATTGAG
             1210      1220      1230      1240      1250      1260

    1260      1270      1280      1290      1300      1310         
_Seque ATGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCTGGACCAGGATACTTGTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT ATGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCTGGACCAGGATACTTGTT
             1270      1280      1290      1300      1310      1320

    1320      1330      1340      1350      1360      1370         
_Seque CAGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTCTAGGCTGCATGTTAAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CAGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTCTAGGCTGCATGTTAAAT
             1330      1340      1350      1360      1370      1380

    1380      1390      1400      1410      1420      1430         
_Seque GGCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCACCATCTCAAGGGAAAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GGCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCACCATCTCAAGGGAAAAT
             1390      1400      1410      1420      1430      1440

    1440      1450      1460      1470      1480      1490         
_Seque GGAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGCTGAAGATGTCTGCTGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GGAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGCTGAAGATGTCTGCTGAT
             1450      1460      1470      1480      1490      1500

    1500      1510      1520      1530       1540      1550        
_Seque GATGGCATCCGAAATCTATACTTGGATTTTGGTGGT-CCCGAGGGAGAACTGACCATGGA
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
EM_PAT GATGGCATCCGAAATCTATACTTGGATTTTGGTGGTCCCCGAGGGAGAACTGACCATGGA
             1510      1520      1530      1540      1550      1560

     1560      1570      1580      1590      1600      1610        
_Seque CCTGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGTTTTTATCGGCCAAAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CCTGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGTTTTTATCGGCCAAAGT
             1570      1580      1590      1600      1610      1620

     1620      1630      1640      1650      1660      1670        
_Seque CACTCGTATGGGACTGCTTGTATGAGCAACAAAAAATCAGAAAAGAGCCTTGACTGTCAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CACTCGTATGGGACTGCTTGTATGAGCAACAAAAAATCAGAAAAGAGCCTTGACTGTCAC
             1630      1640      1650      1660      1670      1680

     1680      1690      1700
_Seque AAGAAATATTTCCACCTCAAAA
       ::::::::::::::::::::: 
EM_PAT AAGAAATATTTCCACCTCAAA 
             1690      1700  

>>EM_MUS:U00678; U00678 Mus musculus beta-2-syntrophin m  (3211 nt)
 initn: 6795 init1: 5897 opt: 6174  Z-score: 4865.0  bits: 914.1 E():    0
banded Smith-Waterman score: 6857;  90.030% identity (90.030% similar) in 1685 nt overlap (16-1700:2-1670)

               10        20        30        40        50        60
_Seque GCCGAGGCTGCCTGACTGGAATGAGGGTAGCTGCGGCGACTGCGGCGGCTGGAGCGGGGC
                      :::::::  ::: :::::: :: :: ::::: :: ::::: ::::
EM_MUS               GCTGGAATCGGGGGAGCTGCAGCAACGGCGGCTGCGGGAGCAGGGC
                             10        20        30        40      

               70        80        90       100       110       120
_Seque CGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGGTGGAGCTGCTCCTGAGGG
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::
EM_MUS CGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGGTGGAGCTGCTTCTAAGGG
         50        60        70        80        90       100      

              130       140       150       160       170       180
_Seque AGCGCTGGGTCCGAGTGGTGGCCGAGCTGAGCGGGGAGAGCCTGAGCCTGACGGGCGACG
       :::::::::: :: :::::::::::::: :: :: :::::::::::::::::::::::::
EM_MUS AGCGCTGGGTGCGGGTGGTGGCCGAGCTCAGTGGCGAGAGCCTGAGCCTGACGGGCGACG
        110       120       130       140       150       160      

              190       200       210       220       230       240
_Seque CCGCCGCGGCCGAGCTGGAGCCCGCTCTGGGACCCGCGGCCGCCGCCTTCAACGGCCTCC
       ::::::: : :::::  ::: ::::           :::: :::::::::::::: :: :
EM_MUS CCGCCGCAGTCGAGCCTGAG-CCGC-----------CGGCGGCCGCCTTCAACGGTCTTC
        170       180        190                  200       210    

              250       260       270       280       290       300
_Seque CAAACGGCGGCGGCGCGGGCGACTCGCTGCCCGGGAGCCCAAGCCGCGGCCTGGGGCCCC
       : ::::::::::::   ::::: :: :::::::::::::: : ::: ::::::::::: :
EM_MUS CGAACGGCGGCGGC---GGCGAGTCTCTGCCCGGGAGCCCGAACCGTGGCCTGGGGCCGC
          220          230       240       250       260       270 

              310       320       330       340       350       360
_Seque CGAGCCCGCCGGCGCCGCCTCGGGGCCCCGCGGGTGAGGCGGGCGCGTCGCCGCCCGTGC
       : ::::: :: :::::::: :: :: :::::::: :: ::: :::: :::::::::::::
EM_MUS CCAGCCCTCCCGCGCCGCCCCGCGGTCCCGCGGGGGAAGCGAGCGCCTCGCCGCCCGTGC
             280       290       300       310       320       330 

              370       380       390       400       410       420
_Seque GCCGGGTGCGGGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCATCAGCATCAAGGGCGGCC
       :::: ::::: :::::::::::::::::::::::::::::::::::::::::::::::::
EM_MUS GCCGAGTGCGAGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCATCAGCATCAAGGGCGGCC
             340       350       360       370       380       390 

              430       440       450       460       470       480
_Seque GCGAGAACCGGATGCCGATCCTCATCTCCAAGATCTTCCCCGGGCTGGCTGCCGACCAGA
       :::::::::::::::::::::::::::::::::::::::: :::::::: ::::::::::
EM_MUS GCGAGAACCGGATGCCGATCCTCATCTCCAAGATCTTCCCGGGGCTGGCGGCCGACCAGA
             400       410       420       430       440       450 

              490       500       510       520       530       540
_Seque GCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACGGCACCGACCTGCGCCAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_MUS GCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACGGCACCGACCTGCGCCAGG
             460       470       480       490       500       510 

              550       560       570       580       590       600
_Seque CCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGCGCGGGCAAGGAGGTGCTGCTGGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_MUS CCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGCGCGGGCAAGGAGGTGCTGCTGGAGG
             520       530       540       550       560       570 

              610       620       630       640       650       660
_Seque TCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGC
       :::: :::::::::::::::::::::::::::::::: ::::: ::::::::::::::::
EM_MUS TCAAATTCATCCGAGAAGTAACACCATATATCAAGAAACCATCTTTAGTATCAGATCTGC
             580       590       600       610       620       630 

              670       680       690       700       710       720
_Seque CGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGC
       : :::::::::::  : :::::::: :::::::::::::::::::: :::::::: :: :
EM_MUS CATGGGAAGGTGCCTCTCCCCAGTCTCCAAGCTTTAGTGGCAGTGAAGACTCTGGCTCTC
             640       650       660       670       680       690 

              730       740       750       760       770       780
_Seque CAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCTG
       :::: :: ::::::: :::::::::::::::: :::::::::::::::::::::::::::
EM_MUS CAAAGCATCAGAACACCACCAAGGACAGGAAGGTCATCCCTCTCAAAATGTGCTTTGCTG
             700       710       720       730       740       750 

              790       800       810       820       830       840
_Seque CTAGAAACCTAAGCATGCCGGATCTGGAAAACAGATTGATAGAGCTACATTCTCCTGATA
       :: ::::::: :::::::: :::::::: :::::::::::::::::::::::::::::::
EM_MUS CTCGAAACCTGAGCATGCCAGATCTGGAGAACAGATTGATAGAGCTACATTCTCCTGATA
             760       770       780       790       800       810 

              850       860       870       880       890       900
_Seque GCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTAG
       :::::::::: :::::: :::::::::: ::::: :::::::::::::::::::::::::
EM_MUS GCAGGAACACCTTGATCTTACGCTGCAAGGATACGGCCACAGCACACTCCTGGTTCGTAG
             820       830       840       850       860       870 

              910       920       930       940       950       960
_Seque CTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATGC
       :::::::::::::::::::::::::::::::::::::  ::::::: ::::: :::::::
EM_MUS CTATCCACACCAACATAATGGCTCTCCTCCCACAGGTACTGGCTGAGCTCAATGCCATGC
             880       890       900       910       920       930 

              970       980       990      1000      1010      1020
_Seque TTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAG
       :::: :::::::::::::: :::::::: :: :: :: ::::::::::::::::::::::
EM_MUS TTGGTGCAACCAGTACAGCGGGAGGCAGCAAGGAAGTCAAGCATATTGCCTGGCTGGCAG
             940       950       960       970       980       990 

             1030      1040      1050      1060      1070      1080
_Seque AACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACTG
       : :::::::: :: ::::::::: ::::::: ::::: ::::: ::::::::::::::::
EM_MUS AGCAGGCAAAGCTGGATGGTGGACGACAGCAGTGGAGGCCTGTTCTCATGGCTGTGACTG
            1000      1010      1020      1030      1040      1050 

             1090      1100      1110      1120      1130      1140
_Seque AGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAGATGCCTGGGCGTCACCAT
       ::::::: ::::: :: :::::::: ::::: :::::::::::::::::::: ::::: :
EM_MUS AGAAGGACTTGCTACTTTATGACTGCATGCCTTGGACAAGAGATGCCTGGGCATCACCGT
            1060      1070      1080      1090      1100      1110 

             1150      1160      1170      1180      1190      1200
_Seque GCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTGGCTCCGGATGTCGATCCC
       : :: :::::::: ::::::::::: :::::::::::::: :: :: :::::::: :: :
EM_MUS GTCATAGCTACCCTCTTGTTGCCACAAGGTTGGTTCATTCAGGTTCTGGATGTCGGTCAC
            1120      1130      1140      1150      1160      1170 

             1210      1220      1230      1240      1250      1260
_Seque CCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCTCTCGACAGGGCATTGAGA
       ::::::::::::::::::: :: ::::::::::::::::::::::: :::::::::::::
EM_MUS CCTCCCTTGGATCTGACCTGACCTTTGCTACCAGGACAGGCTCTCGGCAGGGCATTGAGA
            1180      1190      1200      1210      1220      1230 

             1270      1280      1290      1300      1310      1320
_Seque TGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCTGGACCAGGATACTTGTTC
       :::::::::::::::: :: :: ::::::::: ::::  :::::::::: ::::::::::
EM_MUS TGCATCTCTTCAGGGTTGAAACTCATCGGGATTTGTCGACCTGGACCAGAATACTTGTTC
            1240      1250      1260      1270      1280      1290 

             1330      1340      1350      1360      1370      1380
_Seque AGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTCTAGGCTGCATGTTAAATG
       :::: ::::::::::::::::::::::::::::::::::: ::::::::::  :::: ::
EM_MUS AGGGCTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCCCTAGGCTGCACCTTAAGTG
            1300      1310      1320      1330      1340      1350 

             1390      1400      1410      1420      1430      1440
_Seque GCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCACCATCTCAAGGGAAAATG
       :::::::::: ::: : ::: : ::::::::: : :::::::: ::: : :: :: ::::
EM_MUS GCCAAGAGGTAAGGTTCACTGTCCACTATGAACACGGGTTCACTATCACCAGAGACAATG
            1360      1370      1380      1390      1400      1410 

             1450      1460      1470      1480      1490      1500
_Seque GAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGCTGAAGATGTCTGCTGATG
       ::::: :::::::::::::::::::::: ::::::::: :::::::::::::::::::::
EM_MUS GAGGCGCCAGCAGCATATTGTACCGCTATCCCTTTGAACGGCTGAAGATGTCTGCTGATG
            1420      1430      1440      1450      1460      1470 

             1510      1520      1530      1540      1550      1560
_Seque ATGGCATCCGAAATCTATACTTGGATTTTGGTGGTCCCGAGGGAGAACTGACCATGGACC
       :::: ::: ::::::: :: :::::::::::::: :: :::::::::::::: :::::::
EM_MUS ATGGAATCAGAAATCTCTATTTGGATTTTGGTGGCCCTGAGGGAGAACTGACTATGGACC
            1480      1490      1500      1510      1520      1530 

             1570      1580      1590      1600      1610      1620
_Seque TGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGTTTTTATCGGCCAAAGTCA
       :::: :::::::: ::::::::::::::::: ::::::::::: ::::: ::::::::::
EM_MUS TGCATTCTTGTCCAAAGCCGATTGTATTTGTATTGCACACGTTCTTATCCGCCAAAGTCA
            1540      1550      1560      1570      1580      1590 

             1630      1640      1650      1660      1670      1680
_Seque CTCGTATGGGACTGCTTGTATGAGCAACAAAAAATCAGAAAAGAGCCTTGACTGTCACAA
       :::: :::::::::::::: :::::: : :: : : :  ::::::: :::::::::::::
EM_MUS CTCGCATGGGACTGCTTGTGTGAGCAGC-AAGAGTGAAGAAAGAGCTTTGACTGTCACAA
            1600      1610       1620      1630      1640      1650

             1690      1700                                        
_Seque GAAATATTTCCACCTCAAAA                                        
       ::: ::::::::::::::::                                        
EM_MUS GAAGTATTTCCACCTCAAAAGATGAAAAGAAAGAAAAAGCAACAACAAAGAAGCACAAAC
             1660      1670      1680      1690      1700      1710

>>EM_PAT:CS427156; CS427156 Sequence 61 from Patent WO20  (4423 nt)
 initn: 6805 init1: 5897 opt: 6174  Z-score: 4863.3  bits: 914.3 E():    0
banded Smith-Waterman score: 6867;  90.041% identity (90.041% similar) in 1687 nt overlap (14-1700:1-1671)

               10        20        30        40        50        60
_Seque GCCGAGGCTGCCTGACTGGAATGAGGGTAGCTGCGGCGACTGCGGCGGCTGGAGCGGGGC
                    :::::::::  ::: :::::: :: :: ::::: :: ::::: ::::
EM_PAT              GACTGGAATCGGGGGAGCTGCAGCAACGGCGGCTGCGGGAGCAGGGC
                            10        20        30        40       

               70        80        90       100       110       120
_Seque CGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGGTGGAGCTGCTCCTGAGGG
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::
EM_PAT CGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCGGGGCTGGTGGAGCTGCTTCTAAGGG
        50        60        70        80        90       100       

              130       140       150       160       170       180
_Seque AGCGCTGGGTCCGAGTGGTGGCCGAGCTGAGCGGGGAGAGCCTGAGCCTGACGGGCGACG
       :::::::::: :: :::::::::::::: :: :: :::::::::::::::::::::::::
EM_PAT AGCGCTGGGTGCGGGTGGTGGCCGAGCTCAGTGGCGAGAGCCTGAGCCTGACGGGCGACG
       110       120       130       140       150       160       

              190       200       210       220       230       240
_Seque CCGCCGCGGCCGAGCTGGAGCCCGCTCTGGGACCCGCGGCCGCCGCCTTCAACGGCCTCC
       ::::::: : :::::  ::: ::::           :::: :::::::::::::: :: :
EM_PAT CCGCCGCAGTCGAGCCTGAG-CCGC-----------CGGCGGCCGCCTTCAACGGTCTTC
       170       180        190                  200       210     

              250       260       270       280       290       300
_Seque CAAACGGCGGCGGCGCGGGCGACTCGCTGCCCGGGAGCCCAAGCCGCGGCCTGGGGCCCC
       : ::::::::::::   ::::: :: :::::::::::::: : ::: ::::::::::: :
EM_PAT CGAACGGCGGCGGC---GGCGAGTCTCTGCCCGGGAGCCCGAACCGTGGCCTGGGGCCGC
         220          230       240       250       260       270  

              310       320       330       340       350       360
_Seque CGAGCCCGCCGGCGCCGCCTCGGGGCCCCGCGGGTGAGGCGGGCGCGTCGCCGCCCGTGC
       : ::::: :: :::::::: :: :: :::::::: :: ::: :::: :::::::::::::
EM_PAT CCAGCCCTCCCGCGCCGCCCCGCGGTCCCGCGGGGGAAGCGAGCGCCTCGCCGCCCGTGC
            280       290       300       310       320       330  

              370       380       390       400       410       420
_Seque GCCGGGTGCGGGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCATCAGCATCAAGGGCGGCC
       :::: ::::: :::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCCGAGTGCGAGTGGTGAAGCAAGAGGCGGGCGGCCTGGGCATCAGCATCAAGGGCGGCC
            340       350       360       370       380       390  

              430       440       450       460       470       480
_Seque GCGAGAACCGGATGCCGATCCTCATCTCCAAGATCTTCCCCGGGCTGGCTGCCGACCAGA
       :::::::::::::::::::::::::::::::::::::::: :::::::: ::::::::::
EM_PAT GCGAGAACCGGATGCCGATCCTCATCTCCAAGATCTTCCCGGGGCTGGCGGCCGACCAGA
            400       410       420       430       440       450  

              490       500       510       520       530       540
_Seque GCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACGGCACCGACCTGCGCCAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT GCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCGGTGAACGGCACCGACCTGCGCCAGG
            460       470       480       490       500       510  

              550       560       570       580       590       600
_Seque CCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGCGCGGGCAAGGAGGTGCTGCTGGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PAT CCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGCGCGGGCAAGGAGGTGCTGCTGGAGG
            520       530       540       550       560       570  

              610       620       630       640       650       660
_Seque TCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGC
       :::: :::::::::::::::::::::::::::::::: ::::: ::::::::::::::::
EM_PAT TCAAATTCATCCGAGAAGTAACACCATATATCAAGAAACCATCTTTAGTATCAGATCTGC
            580       590       600       610       620       630  

              670       680       690       700       710       720
_Seque CGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGC
       : :::::::::::  : :::::::: :::::::::::::::::::: :::::::: :: :
EM_PAT CATGGGAAGGTGCCTCTCCCCAGTCTCCAAGCTTTAGTGGCAGTGAAGACTCTGGCTCTC
            640       650       660       670       680       690  

              730       740       750       760       770       780
_Seque CAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCTG
       :::: :: ::::::: :::::::::::::::: :::::::::::::::::::::::::::
EM_PAT CAAAGCATCAGAACACCACCAAGGACAGGAAGGTCATCCCTCTCAAAATGTGCTTTGCTG
            700       710       720       730       740       750  

              790       800       810       820       830       840
_Seque CTAGAAACCTAAGCATGCCGGATCTGGAAAACAGATTGATAGAGCTACATTCTCCTGATA
       :: ::::::: :::::::: :::::::: :::::::::::::::::::::::::::::::
EM_PAT CTCGAAACCTGAGCATGCCAGATCTGGAGAACAGATTGATAGAGCTACATTCTCCTGATA
            760       770       780       790       800       810  

              850       860       870       880       890       900
_Seque GCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTAG
       :::::::::: :::::: :::::::::: ::::: :::::::::::::::::::::::::
EM_PAT GCAGGAACACCTTGATCTTACGCTGCAAGGATACGGCCACAGCACACTCCTGGTTCGTAG
            820       830       840       850       860       870  

              910       920       930       940       950       960
_Seque CTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATGC
       :::::::::::::::::::::::::::::::::::::  ::::::: ::::: :::::::
EM_PAT CTATCCACACCAACATAATGGCTCTCCTCCCACAGGTACTGGCTGAGCTCAATGCCATGC
            880       890       900       910       920       930  

              970       980       990      1000      1010      1020
_Seque TTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAG
       :::: :::::::::::::: :::::::: :: :: :: ::::::::::::::::::::::
EM_PAT TTGGTGCAACCAGTACAGCGGGAGGCAGCAAGGAAGTCAAGCATATTGCCTGGCTGGCAG
            940       950       960       970       980       990  

             1030      1040      1050      1060      1070      1080
_Seque AACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACTG
       : :::::::: :: ::::::::: ::::::: ::::: ::::: ::::::::::::::::
EM_PAT AGCAGGCAAAGCTGGATGGTGGACGACAGCAGTGGAGGCCTGTTCTCATGGCTGTGACTG
           1000      1010      1020      1030      1040      1050  

             1090      1100      1110      1120      1130      1140
_Seque AGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAGATGCCTGGGCGTCACCAT
       ::::::: ::::: :: :::::::: ::::: :::::::::::::::::::: ::::: :
EM_PAT AGAAGGACTTGCTACTTTATGACTGCATGCCTTGGACAAGAGATGCCTGGGCATCACCGT
           1060      1070      1080      1090      1100      1110  

             1150      1160      1170      1180      1190      1200
_Seque GCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTGGCTCCGGATGTCGATCCC
       : :: :::::::: ::::::::::: :::::::::::::: :: :: :::::::: :: :
EM_PAT GTCATAGCTACCCTCTTGTTGCCACAAGGTTGGTTCATTCAGGTTCTGGATGTCGGTCAC
           1120      1130      1140      1150      1160      1170  

             1210      1220      1230      1240      1250      1260
_Seque CCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCTCTCGACAGGGCATTGAGA
       ::::::::::::::::::: :: ::::::::::::::::::::::: :::::::::::::
EM_PAT CCTCCCTTGGATCTGACCTGACCTTTGCTACCAGGACAGGCTCTCGGCAGGGCATTGAGA
           1180      1190      1200      1210      1220      1230  

             1270      1280      1290      1300      1310      1320
_Seque TGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCTGGACCAGGATACTTGTTC
       :::::::::::::::: :: :: ::::::::: ::::  :::::::::: ::::::::::
EM_PAT TGCATCTCTTCAGGGTTGAAACTCATCGGGATTTGTCGACCTGGACCAGAATACTTGTTC
           1240      1250      1260      1270      1280      1290  

             1330      1340      1350      1360      1370      1380
_Seque AGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTCTAGGCTGCATGTTAAATG
       :::: ::::::::::::::::::::::::::::::::::: ::::::::::  :::: ::
EM_PAT AGGGCTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCCCTAGGCTGCACCTTAAGTG
           1300      1310      1320      1330      1340      1350  

             1390      1400      1410      1420      1430      1440
_Seque GCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCACCATCTCAAGGGAAAATG
       :::::::::: ::: : ::: : ::::::::: : :::::::: ::: : :: :: ::::
EM_PAT GCCAAGAGGTAAGGTTCACTGTCCACTATGAACACGGGTTCACTATCACCAGAGACAATG
           1360      1370      1380      1390      1400      1410  

             1450      1460      1470      1480      1490      1500
_Seque GAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGCTGAAGATGTCTGCTGATG
       ::::: :::::::::::::::::::::: ::::::::: :::::::::::::::::::::
EM_PAT GAGGCGCCAGCAGCATATTGTACCGCTATCCCTTTGAACGGCTGAAGATGTCTGCTGATG
           1420      1430      1440      1450      1460      1470  

             1510      1520      1530      1540      1550      1560
_Seque ATGGCATCCGAAATCTATACTTGGATTTTGGTGGTCCCGAGGGAGAACTGACCATGGACC
       :::: ::: ::::::: :: :::::::::::::: :: :::::::::::::: :::::::
EM_PAT ATGGAATCAGAAATCTCTATTTGGATTTTGGTGGCCCTGAGGGAGAACTGACTATGGACC
           1480      1490      1500      1510      1520      1530  

             1570      1580      1590      1600      1610      1620
_Seque TGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGTTTTTATCGGCCAAAGTCA
       :::: :::::::: ::::::::::::::::: ::::::::::: ::::: ::::::::::
EM_PAT TGCATTCTTGTCCAAAGCCGATTGTATTTGTATTGCACACGTTCTTATCCGCCAAAGTCA
           1540      1550      1560      1570      1580      1590  

             1630      1640      1650      1660      1670      1680
_Seque CTCGTATGGGACTGCTTGTATGAGCAACAAAAAATCAGAAAAGAGCCTTGACTGTCACAA
       :::: :::::::::::::: :::::: : :: : : :  ::::::: :::::::::::::
EM_PAT CTCGCATGGGACTGCTTGTGTGAGCAGC-AAGAGTGAAGAAAGAGCTTTGACTGTCACAA
           1600      1610      1620       1630      1640      1650 

             1690      1700                                        
_Seque GAAATATTTCCACCTCAAAA                                        
       ::: ::::::::::::::::                                        
EM_PAT GAAGTATTTCCACCTCAAAAGATGAAAAGAAAGAAAAAGCAACAACAAAGAAGCACAAAC
            1660      1670      1680      1690      1700      1710 

>>EM_SY:EF043690; EF043690 Synthetic construct clone ATC  (1563 nt)
 initn: 6435 init1: 5871 opt: 5984  Z-score: 4719.0  bits: 886.1 E():    0
banded Smith-Waterman score: 6498;  90.494% identity (90.494% similar) in 1578 nt overlap (66-1643:1-1563)

          40        50        60        70        80        90     
_Seque GCGACTGCGGCGGCTGGAGCGGGGCCGGCCATGGCGGTGTGGACGCGGGCCACCAAAGCG
                                     ::::::::::::::::::::::::::::::
EM_SY:                               ATGGCGGTGTGGACGCGGGCCACCAAAGCG
                                             10        20        30

         100       110       120       130       140       150     
_Seque GGGCTGGTGGAGCTGCTCCTGAGGGAGCGCTGGGTCCGAGTGGTGGCCGAGCTGAGCGGG
       ::::::::::::::::: :: :::::::::::::: :: :::::::::::::: :: :: 
EM_SY: GGGCTGGTGGAGCTGCTTCTAAGGGAGCGCTGGGTGCGGGTGGTGGCCGAGCTCAGTGGC
               40        50        60        70        80        90

         160       170       180       190       200       210     
_Seque GAGAGCCTGAGCCTGACGGGCGACGCCGCCGCGGCCGAGCTGGAGCCCGCTCTGGGACCC
       :::::::::::::::::::::::::::::::: : :::::  ::: ::::          
EM_SY: GAGAGCCTGAGCCTGACGGGCGACGCCGCCGCAGTCGAGCCTGAG-CCGC----------
              100       110       120       130                    

         220       230       240       250       260       270     
_Seque GCGGCCGCCGCCTTCAACGGCCTCCCAAACGGCGGCGGCGCGGGCGACTCGCTGCCCGGG
        :::: :::::::::::::: :: :: ::::::::::::   ::::: :: :::::::::
EM_SY: -CGGCGGCCGCCTTCAACGGTCTTCCGAACGGCGGCGGC---GGCGAGTCTCTGCCCGGG
      140       150       160       170          180       190     

         280       290       300       310       320       330     
_Seque AGCCCAAGCCGCGGCCTGGGGCCCCCGAGCCCGCCGGCGCCGCCTCGGGGCCCCGCGGGT
       ::::: : ::: ::::::::::: :: ::::: :: :::::::: :: :: :::::::: 
EM_SY: AGCCCGAACCGTGGCCTGGGGCCGCCCAGCCCTCCCGCGCCGCCCCGCGGTCCCGCGGGG
         200       210       220       230       240       250     

         340       350       360       370       380       390     
_Seque GAGGCGGGCGCGTCGCCGCCCGTGCGCCGGGTGCGGGTGGTGAAGCAAGAGGCGGGCGGC
       :: ::: :::: ::::::::::::::::: ::::: ::::::::::::::::::::::::
EM_SY: GAAGCGAGCGCCTCGCCGCCCGTGCGCCGAGTGCGAGTGGTGAAGCAAGAGGCGGGCGGC
         260       270       280       290       300       310     

         400       410       420       430       440       450     
_Seque CTGGGCATCAGCATCAAGGGCGGCCGCGAGAACCGGATGCCGATCCTCATCTCCAAGATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_SY: CTGGGCATCAGCATCAAGGGCGGCCGCGAGAACCGGATGCCGATCCTCATCTCCAAGATC
         320       330       340       350       360       370     

         460       470       480       490       500       510     
_Seque TTCCCCGGGCTGGCTGCCGACCAGAGCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCG
       ::::: :::::::: :::::::::::::::::::::::::::::::::::::::::::::
EM_SY: TTCCCGGGGCTGGCGGCCGACCAGAGCCGGGCGCTGCGGCTGGGCGACGCCATCCTGTCG
         380       390       400       410       420       430     

         520       530       540       550       560       570     
_Seque GTGAACGGCACCGACCTGCGCCAGGCCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_SY: GTGAACGGCACCGACCTGCGCCAGGCCACCCACGACCAGGCCGTGCAGGCGCTGAAGCGC
         440       450       460       470       480       490     

         580       590       600       610       620       630     
_Seque GCGGGCAAGGAGGTGCTGCTGGAGGTCAAGTTCATCCGAGAAGTAACACCATATATCAAG
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
EM_SY: GCGGGCAAGGAGGTGCTGCTGGAGGTCAAATTCATCCGAGAAGTAACACCATATATCAAG
         500       510       520       530       540       550     

         640       650       660       670       680       690     
_Seque AAGCCATCATTAGTATCAGATCTGCCGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTT
       :: ::::: ::::::::::::::::: :::::::::::  : :::::::: :::::::::
EM_SY: AAACCATCTTTAGTATCAGATCTGCCATGGGAAGGTGCCTCTCCCCAGTCTCCAAGCTTT
         560       570       580       590       600       610     

         700       710       720       730       740       750     
_Seque AGTGGCAGTGAGGACTCTGGTTCGCCAAAACACCAGAACAGCACCAAGGACAGGAAGATC
       ::::::::::: :::::::: :: ::::: :: ::::::: :::::::::::::::: ::
EM_SY: AGTGGCAGTGAAGACTCTGGCTCTCCAAAGCATCAGAACACCACCAAGGACAGGAAGGTC
         620       630       640       650       660       670     

         760       770       780       790       800       810     
_Seque ATCCCTCTCAAAATGTGCTTTGCTGCTAGAAACCTAAGCATGCCGGATCTGGAAAACAGA
       ::::::::::::::::::::::::::: ::::::: :::::::: :::::::: ::::::
EM_SY: ATCCCTCTCAAAATGTGCTTTGCTGCTCGAAACCTGAGCATGCCAGATCTGGAGAACAGA
         680       690       700       710       720       730     

         820       830       840       850       860       870     
_Seque TTGATAGAGCTACATTCTCCTGATAGCAGGAACACGTTGATCCTACGCTGCAAAGATACA
       ::::::::::::::::::::::::::::::::::: :::::: :::::::::: ::::: 
EM_SY: TTGATAGAGCTACATTCTCCTGATAGCAGGAACACCTTGATCTTACGCTGCAAGGATACG
         740       750       760       770       780       790     

         880       890       900       910       920       930     
_Seque GCCACAGCACACTCCTGGTTCGTAGCTATCCACACCAACATAATGGCTCTCCTCCCACAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_SY: GCCACAGCACACTCCTGGTTCGTAGCTATCCACACCAACATAATGGCTCTCCTCCCACAG
         800       810       820       830       840       850     

         940       950       960       970       980       990     
_Seque GTGTTGGCTGAACTCAACGCCATGCTTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAG
       ::  ::::::: ::::: ::::::::::: :::::::::::::: :::::::: :: :: 
EM_SY: GTACTGGCTGAGCTCAATGCCATGCTTGGTGCAACCAGTACAGCGGGAGGCAGCAAGGAA
         860       870       880       890       900       910     

        1000      1010      1020      1030      1040      1050     
_Seque GTGAAGCATATTGCCTGGCTGGCAGAACAGGCAAAACTAGATGGTGGAAGACAGCAATGG
       :: ::::::::::::::::::::::: :::::::: :: ::::::::: ::::::: :::
EM_SY: GTCAAGCATATTGCCTGGCTGGCAGAGCAGGCAAAGCTGGATGGTGGACGACAGCAGTGG
         920       930       940       950       960       970     

        1060      1070      1080      1090      1100      1110     
_Seque AGACCTGTCCTCATGGCTGTGACTGAGAAGGATTTGCTGCTCTATGACTGTATGCCGTGG
       :: ::::: ::::::::::::::::::::::: ::::: :: :::::::: ::::: :::
EM_SY: AGGCCTGTTCTCATGGCTGTGACTGAGAAGGACTTGCTACTTTATGACTGCATGCCTTGG
         980       990      1000      1010      1020      1030     

        1120      1130      1140      1150      1160      1170     
_Seque ACAAGAGATGCCTGGGCGTCACCATGCCACAGCTACCCACTTGTTGCCACCAGGTTGGTT
       ::::::::::::::::: ::::: :: :: :::::::: ::::::::::: :::::::::
EM_SY: ACAAGAGATGCCTGGGCATCACCGTGTCATAGCTACCCTCTTGTTGCCACAAGGTTGGTT
        1040      1050      1060      1070      1080      1090     

        1180      1190      1200      1210      1220      1230     
_Seque CATTCTGGCTCCGGATGTCGATCCCCCTCCCTTGGATCTGACCTTACATTTGCTACCAGG
       ::::: :: :: :::::::: :: :::::::::::::::::::: :: ::::::::::::
EM_SY: CATTCAGGTTCTGGATGTCGGTCACCCTCCCTTGGATCTGACCTGACCTTTGCTACCAGG
        1100      1110      1120      1130      1140      1150     

        1240      1250      1260      1270      1280      1290     
_Seque ACAGGCTCTCGACAGGGCATTGAGATGCATCTCTTCAGGGTGGAGACACATCGGGATCTG
       ::::::::::: ::::::::::::::::::::::::::::: :: :: ::::::::: ::
EM_SY: ACAGGCTCTCGGCAGGGCATTGAGATGCATCTCTTCAGGGTTGAAACTCATCGGGATTTG
        1160      1170      1180      1190      1200      1210     

        1300      1310      1320      1330      1340      1350     
_Seque TCATCCTGGACCAGGATACTTGTTCAGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAA
       ::  :::::::::: :::::::::::::: ::::::::::::::::::::::::::::::
EM_SY: TCGACCTGGACCAGAATACTTGTTCAGGGCTGCCATGCTGCTGCTGAGCTGATCAAGGAA
        1220      1230      1240      1250      1260      1270     

        1360      1370      1380      1390      1400      1410     
_Seque GTCTCTCTAGGCTGCATGTTAAATGGCCAAGAGGTGAGGCTTACTATTCACTATGAAAAT
       ::::: ::::::::::  :::: :::::::::::: ::: : ::: : ::::::::: : 
EM_SY: GTCTCCCTAGGCTGCACCTTAAGTGGCCAAGAGGTAAGGTTCACTGTCCACTATGAACAC
        1280      1290      1300      1310      1320      1330     

        1420      1430      1440      1450      1460      1470     
_Seque GGGTTCACCATCTCAAGGGAAAATGGAGGCTCCAGCAGCATATTGTACCGCTACCCCTTT
       :::::::: ::: : :: :: ::::::::: :::::::::::::::::::::: ::::::
EM_SY: GGGTTCACTATCACCAGAGACAATGGAGGCGCCAGCAGCATATTGTACCGCTATCCCTTT
        1340      1350      1360      1370      1380      1390     

        1480      1490      1500      1510      1520      1530     
_Seque GAAAGGCTGAAGATGTCTGCTGATGATGGCATCCGAAATCTATACTTGGATTTTGGTGGT
       ::: ::::::::::::::::::::::::: ::: ::::::: :: :::::::::::::: 
EM_SY: GAACGGCTGAAGATGTCTGCTGATGATGGAATCAGAAATCTCTATTTGGATTTTGGTGGC
        1400      1410      1420      1430      1440      1450     

        1540      1550      1560      1570      1580      1590     
_Seque CCCGAGGGAGAACTGACCATGGACCTGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTG
       :: :::::::::::::: ::::::::::: :::::::: ::::::::::::::::: :::
EM_SY: CCTGAGGGAGAACTGACTATGGACCTGCATTCTTGTCCAAAGCCGATTGTATTTGTATTG
        1460      1470      1480      1490      1500      1510     

        1600      1610      1620      1630      1640      1650     
_Seque CACACGTTTTTATCGGCCAAAGTCACTCGTATGGGACTGCTTGTATGAGCAACAAAAAAT
       :::::::: ::::: :::::::::::::: :::::::::::::: :::            
EM_SY: CACACGTTCTTATCCGCCAAAGTCACTCGCATGGGACTGCTTGTGTGA            
        1520      1530      1540      1550      1560               

        1660      1670      1680      1690      1700
_Seque CAGAAAAGAGCCTTGACTGTCACAAGAAATATTTCCACCTCAAAA

>>EM_MUS:BC030352; BC030352 Mus musculus syntrophin, bas  (1340 nt)
rev-comp initn: 5367 init1: 5202 opt: 5377  Z-score: 4240.8  bits: 797.4 E():    0
banded Smith-Waterman score: 5377;  91.315% identity (91.315% similar) in 1278 nt overlap (1700-423:64-1340)

                                  1700      1690      1680         
_Sequ-                               TTTTGAGGTGGAAATATTTCTTGTGACAGT
                                     :::::::::::::::: :::::::::::::
EM_MUS CTTTGTTGTTGCTTTTTCTTTCTTTTCATCTTTTGAGGTGGAAATACTTCTTGTGACAGT
            40        50        60        70        80        90   

    1670      1660      1650      1640      1630      1620         
_Sequ- CAAGGCTCTTTTCTGATTTTTTGTTGCTCATACAAGCAGTCCCATACGAGTGACTTTGGC
       ::: :::: :::::    : ::: :::::: :::::::::::::: ::::::::::::::
EM_MUS CAAAGCTC-TTTCTTCACTCTTGCTGCTCACACAAGCAGTCCCATGCGAGTGACTTTGGC
           100        110       120       130       140       150  

    1610      1600      1590      1580      1570      1560         
_Sequ- CGATAAAAACGTGTGCAACACAAATACAATCGGCTTCGGACAAGAGTGCAGGTCCATGGT
        ::::: ::::::::::: ::::::::::::::::: :::::::: ::::::::::: ::
EM_MUS GGATAAGAACGTGTGCAATACAAATACAATCGGCTTTGGACAAGAATGCAGGTCCATAGT
            160       170       180       190       200       210  

    1550      1540      1530      1520      1510      1500         
_Sequ- CAGTTCTCCCTCGGGACCACCAAAATCCAAGTATAGATTTCGGATGCCATCATCAGCAGA
       :::::::::::: :: :::::::::::::: :: ::::::: ::: ::::::::::::::
EM_MUS CAGTTCTCCCTCAGGGCCACCAAAATCCAAATAGAGATTTCTGATTCCATCATCAGCAGA
            220       230       240       250       260       270  

    1490      1480      1470      1460      1450      1440         
_Sequ- CATCTTCAGCCTTTCAAAGGGGTAGCGGTACAATATGCTGCTGGAGCCTCCATTTTCCCT
       ::::::::::: ::::::::: :::::::::::::::::::::: ::::::::: :: ::
EM_MUS CATCTTCAGCCGTTCAAAGGGATAGCGGTACAATATGCTGCTGGCGCCTCCATTGTCTCT
            280       290       300       310       320       330  

    1430      1420      1410      1400      1390      1380         
_Sequ- TGAGATGGTGAACCCATTTTCATAGTGAATAGTAAGCCTCACCTCTTGGCCATTTAACAT
        : ::: :::::::: : ::::::::: : ::: : ::: :::::::::::: ::::  :
EM_MUS GGTGATAGTGAACCCGTGTTCATAGTGGACAGTGAACCTTACCTCTTGGCCACTTAAGGT
            340       350       360       370       380       390  

    1370      1360      1350      1340      1330      1320         
_Sequ- GCAGCCTAGAGAGACTTCCTTGATCAGCTCAGCAGCAGCATGGCAACCCTGAACAAGTAT
       ::::::::: ::::::::::::::::::::::::::::::::::: ::::::::::::::
EM_MUS GCAGCCTAGGGAGACTTCCTTGATCAGCTCAGCAGCAGCATGGCAGCCCTGAACAAGTAT
            400       410       420       430       440       450  

    1310      1300      1290      1280      1270      1260         
_Sequ- CCTGGTCCAGGATGACAGATCCCGATGTGTCTCCACCCTGAAGAGATGCATCTCAATGCC
        ::::::::::  :::: ::::::::: :: :: ::::::::::::::::::::::::::
EM_MUS TCTGGTCCAGGTCGACAAATCCCGATGAGTTTCAACCCTGAAGAGATGCATCTCAATGCC
            460       470       480       490       500       510  

    1250      1240      1230      1220      1210      1200         
_Sequ- CTGTCGAGAGCCTGTCCTGGTAGCAAATGTAAGGTCAGATCCAAGGGAGGGGGATCGACA
       ::: ::::::::::::::::::::::: :: :::::::::::::::::::: :: :::::
EM_MUS CTGCCGAGAGCCTGTCCTGGTAGCAAAGGTCAGGTCAGATCCAAGGGAGGGTGACCGACA
            520       530       540       550       560       570  

    1190      1180      1170      1160      1150      1140         
_Sequ- TCCGGAGCCAGAATGAACCAACCTGGTGGCAACAAGTGGGTAGCTGTGGCATGGTGACGC
       ::: :: :: :::::::::::::: ::::::::::: :::::::: :: :: ::::: ::
EM_MUS TCCAGAACCTGAATGAACCAACCTTGTGGCAACAAGAGGGTAGCTATGACACGGTGATGC
            580       590       600       610       620       630  

    1130      1120      1110      1100      1090      1080         
_Sequ- CCAGGCATCTCTTGTCCACGGCATACAGTCATAGAGCAGCAAATCCTTCTCAGTCACAGC
       :::::::::::::::::: ::::: :::::::: :: ::::: :::::::::::::::::
EM_MUS CCAGGCATCTCTTGTCCAAGGCATGCAGTCATAAAGTAGCAAGTCCTTCTCAGTCACAGC
            640       650       660       670       680       690  

    1070      1060      1050      1040      1030      1020         
_Sequ- CATGAGGACAGGTCTCCATTGCTGTCTTCCACCATCTAGTTTTGCCTGTTCTGCCAGCCA
       :::::: ::::: ::::: ::::::: ::::::::: :: :::::::: :::::::::::
EM_MUS CATGAGAACAGGCCTCCACTGCTGTCGTCCACCATCCAGCTTTGCCTGCTCTGCCAGCCA
            700       710       720       730       740       750  

    1010      1000       990       980       970       960         
_Sequ- GGCAATATGCTTCACCTCTTTACTGCCTCCTGCTGTACTGGTTGCCCCAAGCATGGCGTT
       :::::::::::: :: :: :: :::::::: :::::::::::::: ::::::::::: ::
EM_MUS GGCAATATGCTTGACTTCCTTGCTGCCTCCCGCTGTACTGGTTGCACCAAGCATGGCATT
            760       770       780       790       800       810  

     950       940       930       920       910       900         
_Sequ- GAGTTCAGCCAACACCTGTGGGAGGAGAGCCATTATGTTGGTGTGGATAGCTACGAACCA
       ::: :::::::  :::::::::::::::::::::::::::::::::::::::::::::::
EM_MUS GAGCTCAGCCAGTACCTGTGGGAGGAGAGCCATTATGTTGGTGTGGATAGCTACGAACCA
            820       830       840       850       860       870  

     890       880       870       860       850       840         
_Sequ- GGAGTGTGCTGTGGCTGTATCTTTGCAGCGTAGGATCAACGTGTTCCTGCTATCAGGAGA
       ::::::::::::::: ::::: :::::::::: :::::: ::::::::::::::::::::
EM_MUS GGAGTGTGCTGTGGCCGTATCCTTGCAGCGTAAGATCAAGGTGTTCCTGCTATCAGGAGA
            880       890       900       910       920       930  

     830       820       810       800       790       780         
_Sequ- ATGTAGCTCTATCAATCTGTTTTCCAGATCCGGCATGCTTAGGTTTCTAGCAGCAAAGCA
       ::::::::::::::::::::: :::::::: :::::::: ::::::: ::::::::::::
EM_MUS ATGTAGCTCTATCAATCTGTTCTCCAGATCTGGCATGCTCAGGTTTCGAGCAGCAAAGCA
            940       950       960       970       980       990  

     770       760       750       740       730       720         
_Sequ- CATTTTGAGAGGGATGATCTTCCTGTCCTTGGTGCTGTTCTGGTGTTTTGGCGAACCAGA
       ::::::::::::::::: :::::::::::::::: ::::::: :: ::::: :: :::::
EM_MUS CATTTTGAGAGGGATGACCTTCCTGTCCTTGGTGGTGTTCTGATGCTTTGGAGAGCCAGA
           1000      1010      1020      1030      1040      1050  

     710       700       690       680       670       660         
_Sequ- GTCCTCACTGCCACTAAAGCTTGGTGACTGGGGGGCTGCACCTTCCCACGGCAGATCTGA
       ::: :::::::::::::::::::: :::::::: :  ::::::::::: :::::::::::
EM_MUS GTCTTCACTGCCACTAAAGCTTGGAGACTGGGGAGAGGCACCTTCCCATGGCAGATCTGA
           1060      1070      1080      1090      1100      1110  

     650       640       630       620       610       600         
_Sequ- TACTAATGATGGCTTCTTGATATATGGTGTTACTTCTCGGATGAACTTGACCTCCAGCAG
       :::::: ::::: :::::::::::::::::::::::::::::::: ::::::::::::::
EM_MUS TACTAAAGATGGTTTCTTGATATATGGTGTTACTTCTCGGATGAATTTGACCTCCAGCAG
           1120      1130      1140      1150      1160      1170  

     590       580       570       560       550       540         
_Sequ- CACCTCCTTGCCCGCGCGCTTCAGCGCCTGCACGGCCTGGTCGTGGGTGGCCTGGCGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_MUS CACCTCCTTGCCCGCGCGCTTCAGCGCCTGCACGGCCTGGTCGTGGGTGGCCTGGCGCAG
           1180      1190      1200      1210      1220      1230  

     530       520       510       500       490       480         
_Sequ- GTCGGTGCCGTTCACCGACAGGATGGCGTCGCCCAGCCGCAGCGCCCGGCTCTGGTCGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_MUS GTCGGTGCCGTTCACCGACAGGATGGCGTCGCCCAGCCGCAGCGCCCGGCTCTGGTCGGC
           1240      1250      1260      1270      1280      1290  

     470       460       450       440       430       420         
_Sequ- AGCCAGCCCGGGGAAGATCTTGGAGATGAGGATCGGCATCCGGTTCTCGCGGCCGCCCTT
        :::::::: ::::::::::::::::::::::::::::::::::::::            
EM_MUS CGCCAGCCCCGGGAAGATCTTGGAGATGAGGATCGGCATCCGGTTCTC            
           1300      1310      1320      1330      1340            

     410       400       390       380       370       360         
_Sequ- GATGCTGATGCCCAGGCCGCCCGCCTCTTGCTTCACCACCCGCACCCGGCGCACGGGCGG



1700 residues in 1 query   sequences
19345946543 residues in 7547515 library sequences
 Tcomplib [34t25] (4 proc)
 start: Mon Feb 12 10:16:21 2007 done: Mon Feb 12 10:31:04 2007
 Total Scan time: 2880.180 Total Display time:  0.020

Function used was FASTA [version 3.4t25 Sept 2, 2005]


We will next consider how to interpret these FASTA results >>>


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