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EBI 2Can Tutorials Nucleotide Analysis

2Can Support Portal - Nucleotide Analysis

BLAST similarity search <<< 7/7 >>>

References



Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. (1997)
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Nucleic Acids Research 25(17): 3389-3402.
abstract

Shpaer E.G., Robinson M., Yee D., Candlin J.D., Mines R., and Hunkapiller T. (1996)
Sensitivity and Selectivity in Protein Similarity Searches: Comparison of Smith-Waterman in Hardware.
Genomics 38: 179-191.
abstract

Altschul S.F. (1991)
Amino acid substitution matrices from an information theoretic perspective.
Journal of Molecular Biology 219: 555-565.
abstract

Altschul S.F. (1993)
A protein alignment scoring system sensitive at all evolutionary distances.
Journal of Molecular Evolution 36: 290-300.
abstract

Altschul S.F., Boguski M.S., Gish W. and Wootton J.C. (1994)
Issues in searching molecular sequence databases.
Nature Genetics 6: 119-129.
abstract

Pearson W.R. (1991)
Searching protein sequence libraries: comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms.
Genomics 11(3): 635-650.
abstract

Altschul S.F., Warren G., Miller W., Myers E.W., and Lipman D.J. (1990)
Basic local alignment search tool.
Journal of Molecular Biology 215: 403-410.
abstract

Claverie J.M. and States D.J. (1993)
Information enhancement methods for large scale sequence analysis.
Computers in Chemistry 17: 191-201.


Gish W. and States D.J. (1993)
Identification of protein coding regions by database similarity search.
Nature Genetics 3: 266-272.
abstract

Henikoff S. and Henikoff J.G. (1992)
Amino acid substitution matrices from protein blocks.
Proceedings of the National Academy of Sciences USA 89: 10915-10919.
abstract

Karlin S. and Altschul S.F. (1990)
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
Proceedings of the National Academy of Sciences USA 87: 2264-2268.
abstract

Karlin S. and Altschul S.F. (1993)
Applications and statistics for multiple high-scoring segments in molecular sequences.
Proceedings of the National Academy of Sciences USA 90: 5873-5877.
abstract

States D.J. and Gish W. (1994)
Combined use of sequence similarity and codon bias for coding region identification.
Journal of Computational Biology 1: 39-50.
abstract

States D.J., Gish W. and Altschul S.F. (1991)
Improved sensitivity of nucleic acid database similarity searches using application specific scoring matrices.
Methods: A companion to Methods in Enzymology 3: 66-70.


Wootton J.C. and Federhen S. (1993)
Statistics of local complexity in amino acid sequences and sequence databases.
Computers in Chemistry 17: 149-163.



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