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EBI 2Can Tutorials Protein Function

2Can Support Portal - Protein Function

InterProScan <<< 6/6 >>>

Using InterProScan - example 2



Here are the results of a second example of using InterProScan.

(a) Picture View


(b) Table View

SEQUENCE: Sequence_1 CRC64: 6F4F6FCBA34265B2 LENGTH: 348 aa
InterPro
IPR000276
Family
Rhodopsin-like GPCR superfamily
PRINTS PR00237 GPCRRHODOPSN 1.4e-42 [39-63]T 1.4e-42 [72-93]T 1.4e-42 [117-139]T 1.4e-42 [152-173]T 1.4e-42 [204-227]T 1.4e-42 [250-274]T 1.4e-42 [288-314]T
PFAM PF00001 7tm_1 4.7e-57 [54-306]T
PROFILE PS50262 G_PROTEIN_RECEP_F1_2 41.415 [54-306]T
PROSITE PS00237 G_PROTEIN_RECEP_F1_1 8e-5 [123-139]T
Parent no parent
Children IPR000025 IPR000174 IPR000204 IPR000248 IPR000355 IPR000405 IPR000496 IPR000499 IPR000503 IPR000586 IPR000611 IPR000670 IPR000723 IPR000725 IPR000820 IPR000826 IPR000921 IPR000929 IPR000995 IPR001053 IPR001069 IPR001350 IPR001402 IPR001416 IPR001418 IPR001520 IPR001556 IPR001634 IPR001658 IPR001671 IPR001681 IPR001760 IPR001793 IPR001817 IPR002002 IPR002131 IPR002188 IPR002230 IPR002231 IPR002232 IPR002233 IPR002234 IPR002258 IPR002275 IPR002276 IPR002282 IPR002286 IPR003904 IPR003905 IPR003909 IPR003912 IPR003980 IPR003981 IPR003984 IPR004061 IPR004065 IPR004071 IPR004072 IPR005387 IPR005388 IPR005389 IPR005390 IPR005393 IPR005395 IPR005464 IPR005466 IPR008102 IPR008103 IPR008109 IPR008112 IPR008361 IPR008365 IPR009126 IPR009132 IPR009144 IPR009150 IPR013312
Found in no entries
Contains IPR010726
GO terms Molecular Function: rhodopsin-like receptor activity (GO:0001584)
Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186)
Cellular Component: integral to membrane (GO:0016021)
InterPro
IPR000732
Family
Rhodopsin
PRINTS PR00579 RHODOPSIN 6.6e-64 [3-21]T 6.6e-64 [22-38]T 6.6e-64 [85-101]T 6.6e-64 [191-207]T 6.6e-64 [271-289]T 6.6e-64 [319-332]T
Parent IPR001760
Children no children
Found in no entries
Contains no entries
GO terms Molecular Function: rhodopsin-like receptor activity (GO:0001584)
Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186)
Biological Process: phototransduction (GO:0007602)
Cellular Component: integral to membrane (GO:0016021)
InterPro
IPR001760
Family
Opsin
PRINTS PR00238 OPSIN 4.9e-19 [60-72]T 4.9e-19 [174-186]T 4.9e-19 [285-297]T
PROSITE PS00238 OPSIN 8e-5 [290-306]T
Parent IPR000276
Children IPR000378 IPR000732 IPR000856 IPR001391 IPR001521 IPR001735 IPR002206 IPR002962
Found in no entries
Contains no entries
GO terms Molecular Function: rhodopsin-like receptor activity (GO:0001584)
Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186)
Biological Process: visual perception (GO:0007601)
Cellular Component: integral to membrane (GO:0016021)
noIPR
unintegrated
unintegrated
GENE3D G3DSA:1.20.1070.10 no description 3e-90 [2-348]T
PANTHER PTHR19264 G-PROTEIN COUPLED RECEPTOR 9.6e-286 [2-347]T
PANTHER PTHR19264:SF291 ROD OPSIN 9.6e-286 [2-347]T
SIGNALP signalp signal-peptide NA [1-51]?
TMHMM tmhmm transmembrane_regions NA [39-59]? NA [74-96]? NA [115-133]? NA [154-174]? NA [202-222]? NA [254-276]? NA [286-306]?
SUPERFAMILY SSF81321 Family A G protein-coupled receptor-like 1.1e-78 [1-348]T
Parent no parent
Children no children
Found in no entries
Contains no entries
GO terms none

The results for our query Sequence Z are shown above. We ran this job interactively and therefore we get our results to our browser. The default view is the picture view above. We have the options on the side of this page to view the results in a table, raw or in xml format. These results will also be sent to us by mail. All results will be kept available for 2 days.

Sequence Z has matched 3 InterPro families. Clicking on these InterPro entries we learn that our sequence is part of the superfamily of Rhodopsin like GPCRs. It is also a member of the opsin family, which is a subfamily of the Rhodopsin like GPCRs. The third family to which it belongs is the Rhodopsin family, a subfamily of the opsin family. These results therefore provide us with different levels of information about our query sequence. We obtain more general information about its function, structure etc. by looking at the superfamily documentation and can get the more specific information about our sequence by examining the subfamily documentation.
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